-----------------------------------------------------------------------------
- Banjo                        Bayesian Network Inference with Java Objects -
- Release 2.2.0                                                 15 Apr 2008 -
- Licensed from Duke University                                             -
- Copyright (c) 2005-08 by Alexander J. Hartemink                           -
- All rights reserved                                                       -
-----------------------------------------------------------------------------
- Project:                                                               50.2
- User:                                                              lsand039
- Dataset:                                  50-vars-377-temporal-observations
- Notes:                                    static bayesian network inference
-----------------------------------------------------------------------------
- Settings file:                                                             
-----------------------------------------------------------------------------
- Input directory:                                 data/release2.0/runA/input
- Observations file:                                                   50.txt
- Observation count:                                                      377
- Number of variables:                                                     51
- Variables are in rows:                                                  yes
- Variable names:                                                      inFile
- Discretization policy:                                                   i7
- Exceptions to the discretization policy:                               none
-----------------------------------------------------------------------------
- Initial structure file:                                                    
- 'Must be present' edges file:                                              
- 'Must not be present' edges file:                                          
- Min. Markov lag:                                                          0
- Max. Markov lag:                                                          0
- Max. parent count:                                                        5
- Equivalent sample size for Dirichlet parameter prior:                   1.0
-----------------------------------------------------------------------------
- Searcher:                                                 SearcherSimAnneal
- Proposer:                                           ProposerRandomLocalMove
- Evaluator:                                        defaulted to EvaluatorBDe
- Decider:                                     defaulted to DeciderMetropolis
-----------------------------------------------------------------------------
- Pre-compute logGamma:                                                    no
- Cache:                                                           fastLevel1
- Cycle checking method:                                   Depth-first Search
-----------------------------------------------------------------------------
- Initial temperature:                                                  25000
- Cooling factor:                                                         0.7
- Reannealing temperature:                                                800
- Max. accepted networks before cooling:                                  250
- Max. proposed networks before cooling:                                25000
- Min. accepted networks before reannealing:                              250
-----------------------------------------------------------------------------
- Output directory:                               data/release2.0/runA/output
- Report file:                      50.2static.report.2016.09.01.16.33.37.txt
- Number of best networks tracked:                                          1
- Max. time:                                                            2.0 h
- Max. restarts:                                                        25000
- Min. networks before checking:                                          250
- Screen reporting interval:                                           10.0 m
- File reporting interval:                                             2.05 h
-----------------------------------------------------------------------------
- Compute influence scores:                                               yes
- Compute consensus graph:                                                yes
- Create consensus graph as HTML:                                         yes
- Create 'dot' output:                                                    yes
- Location of 'dot':  /usr/bin/dot /usr/bin/X11/dot /usr/share/man/man1/dot.1.gz
-----------------------------------------------------------------------------
- XML output directory:                           data/release2.0/runA/output
- XML Report file:                                                           
- XML settings to export:                                                    
- XML parser:                             org.apache.xerces.parsers.SAXParser
- Banjo XML format version:                                               1.0
-----------------------------------------------------------------------------
- Seed for starting search:                                     1472762017841
-----------------------------------------------------------------------------
- Number of threads:                                                        1
-----------------------------------------------------------------------------

Memory info before starting the search: Banjo is using 0 mb of memory
Prep. time used: 203.0 ms
Beginning to search: expect a status report every 10.0 m

Status:  Networks   45406750
         Time       10.0 m (8.3% of max. 2.0 h)
         Re-anneals 479 (1.9% of max. 25000)
         Banjo is using 4 mb of memory

Status:  Networks   79620000
         Time       20.0 m (16.6% of max. 2.0 h)
         Re-anneals 838 (3.3% of max. 25000)
         Banjo is using 4 mb of memory

Status:  Networks   110407250
         Time       30.0 m (25.0% of max. 2.0 h)
         Re-anneals 1171 (4.6% of max. 25000)
         Banjo is using 4 mb of memory

Status:  Networks   140046250
         Time       40.0 m (33.3% of max. 2.0 h)
         Re-anneals 1462 (5.8% of max. 25000)
         Banjo is using 4 mb of memory

Status:  Networks   169131000
         Time       50.0 m (41.6% of max. 2.0 h)
         Re-anneals 1747 (6.9% of max. 25000)
         Banjo is using 4 mb of memory

Status:  Networks   202981000
         Time       1.0 h (50.0% of max. 2.0 h)
         Re-anneals 2090 (8.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   236850750
         Time       1.17 h (58.3% of max. 2.0 h)
         Re-anneals 2445 (9.7% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   280612000
         Time       1.33 h (66.6% of max. 2.0 h)
         Re-anneals 2882 (11.5% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   330368750
         Time       1.5 h (75.0% of max. 2.0 h)
         Re-anneals 3393 (13.5% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   385015750
         Time       1.67 h (83.3% of max. 2.0 h)
         Re-anneals 3969 (15.8% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   438988000
         Time       1.83 h (91.6% of max. 2.0 h)
         Re-anneals 4537 (18.1% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   493804250
         Time       2.0 h (100.0% of max. 2.0 h)
         Re-anneals 5091 (20.3% of max. 25000)
         Banjo is using 5 mb of memory



-----------------------------------------------------------------------------
- Final report                                           Best network overall
-----------------------------------------------------------------------------


Network score: -8230.4893, first found at iteration 139737032
51
 0 3 1 2 46
 1 2 11 30
 2 2 23 48
 3 2 13 30
 4 2 1 12
 5 2 13 23
 6 2 14 23
 7 2 12 20
 8 2 0 27
 9 2 40 42
10 2 14 19
11 2 9 16
12 2 14 42
13 2 20 32
14 2 5 48
15 2 35 48
16 2 14 27
17 1 20
18 2 19 43
19 2 13 38
20 0
21 2 8 10
22 2 12 45
23 2 13 42
24 2 16 40
25 2 28 40
26 2 36 44
27 2 20 42
28 2 3 23
29 2 3 48
30 2 11 42
31 2 13 23
32 2 27 42
33 3 0 4 13
34 2 17 28
35 2 4 13
36 2 15 27
37 2 32 35
38 2 29 32
39 2 6 42
40 2 39 43
41 2 29 32
42 2 17 20
43 2 13 23
44 2 3 13
45 2 14 17
46 2 11 48
47 1 27
48 2 17 32
49 2 13 20
50 2 13 16


-----------------------------------------------------------------------------
- Search Statistics                                                          
-----------------------------------------------------------------------------

Statistics collected in searcher 'SearcherSimAnneal':
  Number of networks examined: 493804250
  Total time used: 2.0 h
  High score: -8230.4893, first found at iteration 139737032
  Number of re-anneals: 5091

Statistics collected in proposer 'ProposerRandomLocalMove':
  Additions -- proposed:    164580645
  Deletions -- proposed:    164642819
  Reversals -- proposed:    164580785

Statistics collected in cycle checker 'CycleCheckerCheckThenApply':
  Additions -- considered:  164580645,  acyclic:  117851063
  Deletions -- no cyclicity test necessary
  Reversals -- considered:  164580785,  acyclic:  109362518

Statistics collected in evaluator 'EvaluatorBDe':
  Scores computed:          181097324
  Scores (cache)            placed         fetched        
      with 0 parents:       51             19306266       
      with 1 parents:       2550           238981675      
      with 2 parents:       26428563       12752089       
      with 3 parents:       145030667      46698791       
      with 4 parents:       9023605        2289112        
      with 5 parents:       611888         96313          

Statistics collected in decider 'DeciderMetropolis':
  Additions -- considered:  117851063,  better score:  6602837,  other accepted:  4666165
  Deletions -- considered:  164642819,  better score:  4815252,  other accepted:  6453654
  Reversals -- considered:  109362518,  better score:  7412698,  other accepted:  3949118
  Average permissivity:     0.04

Memory info after completing the search: Banjo is using 5 mb of memory


Network score: -8230.4893, found by thread 1
51
 0 3 1 2 46
 1 2 11 30
 2 2 23 48
 3 2 13 30
 4 2 1 12
 5 2 13 23
 6 2 14 23
 7 2 12 20
 8 2 0 27
 9 2 40 42
10 2 14 19
11 2 9 16
12 2 14 42
13 2 20 32
14 2 5 48
15 2 35 48
16 2 14 27
17 1 20
18 2 19 43
19 2 13 38
20 0
21 2 8 10
22 2 12 45
23 2 13 42
24 2 16 40
25 2 28 40
26 2 36 44
27 2 20 42
28 2 3 23
29 2 3 48
30 2 11 42
31 2 13 23
32 2 27 42
33 3 0 4 13
34 2 17 28
35 2 4 13
36 2 15 27
37 2 32 35
38 2 29 32
39 2 6 42
40 2 39 43
41 2 29 32
42 2 17 20
43 2 13 23
44 2 3 13
45 2 14 17
46 2 11 48
47 1 27
48 2 17 32
49 2 13 20
50 2 13 16

-----------------------------------------------------------------------------
- Post-processing                                            Influence scores
-----------------------------------------------------------------------------

Influence score for  (46,0) ->   (0,0)   .0549
Influence score for   (2,0) ->   (0,0)   .1091
Influence score for   (1,0) ->   (0,0)   -.2341
Influence score for  (30,0) ->   (1,0)   .3125
Influence score for  (11,0) ->   (1,0)   -.0998
Influence score for  (48,0) ->   (2,0)   .1524
Influence score for  (23,0) ->   (2,0)   .1524
Influence score for  (30,0) ->   (3,0)   -.1467
Influence score for  (13,0) ->   (3,0)   .0000
Influence score for  (12,0) ->   (4,0)   -.1644
Influence score for   (1,0) ->   (4,0)   .0000
Influence score for  (23,0) ->   (5,0)   .3307
Influence score for  (13,0) ->   (5,0)   .0000
Influence score for  (23,0) ->   (6,0)   .0000
Influence score for  (14,0) ->   (6,0)   .0000
Influence score for  (20,0) ->   (7,0)   .3211
Influence score for  (12,0) ->   (7,0)   .0647
Influence score for  (27,0) ->   (8,0)   .0000
Influence score for   (0,0) ->   (8,0)   -.3834
Influence score for  (42,0) ->   (9,0)   .3712
Influence score for  (40,0) ->   (9,0)   .0000
Influence score for  (19,0) ->  (10,0)   .0000
Influence score for  (14,0) ->  (10,0)   .0000
Influence score for  (16,0) ->  (11,0)   .0000
Influence score for   (9,0) ->  (11,0)   .4975
Influence score for  (42,0) ->  (12,0)   .0000
Influence score for  (14,0) ->  (12,0)   -.1750
Influence score for  (32,0) ->  (13,0)   .1664
Influence score for  (20,0) ->  (13,0)   .1664
Influence score for  (48,0) ->  (14,0)   .0000
Influence score for   (5,0) ->  (14,0)   .0000
Influence score for  (48,0) ->  (15,0)   .3172
Influence score for  (35,0) ->  (15,0)   -.0344
Influence score for  (27,0) ->  (16,0)   .0000
Influence score for  (14,0) ->  (16,0)   .0000
Influence score for  (20,0) ->  (17,0)   .0000
Influence score for  (43,0) ->  (18,0)   .0000
Influence score for  (19,0) ->  (18,0)   .0000
Influence score for  (38,0) ->  (19,0)   .0000
Influence score for  (13,0) ->  (19,0)   .3215
Influence score for  (10,0) ->  (21,0)   .0000
Influence score for   (8,0) ->  (21,0)   -.1937
Influence score for  (45,0) ->  (22,0)   .0000
Influence score for  (12,0) ->  (22,0)   .2140
Influence score for  (42,0) ->  (23,0)   .3307
Influence score for  (13,0) ->  (23,0)   .3307
Influence score for  (40,0) ->  (24,0)   -.3164
Influence score for  (16,0) ->  (24,0)   -.3164
Influence score for  (40,0) ->  (25,0)   .0000
Influence score for  (28,0) ->  (25,0)   .3307
Influence score for  (44,0) ->  (26,0)   .0000
Influence score for  (36,0) ->  (26,0)   -.1870
Influence score for  (42,0) ->  (27,0)   -.3209
Influence score for  (20,0) ->  (27,0)   .0000
Influence score for  (23,0) ->  (28,0)   .3311
Influence score for   (3,0) ->  (28,0)   .3311
Influence score for  (48,0) ->  (29,0)   .0000
Influence score for   (3,0) ->  (29,0)   .3164
Influence score for  (42,0) ->  (30,0)   .3105
Influence score for  (11,0) ->  (30,0)   -.0253
Influence score for  (23,0) ->  (31,0)   .3307
Influence score for  (13,0) ->  (31,0)   .3307
Influence score for  (42,0) ->  (32,0)   .3651
Influence score for  (27,0) ->  (32,0)   .1559
Influence score for  (13,0) ->  (33,0)   -.0632
Influence score for   (4,0) ->  (33,0)   .0000
Influence score for   (0,0) ->  (33,0)   .0106
Influence score for  (28,0) ->  (34,0)   .1619
Influence score for  (17,0) ->  (34,0)   .3311
Influence score for  (13,0) ->  (35,0)   -.5065
Influence score for   (4,0) ->  (35,0)   .0757
Influence score for  (27,0) ->  (36,0)   .2070
Influence score for  (15,0) ->  (36,0)   -.1664
Influence score for  (35,0) ->  (37,0)   .1014
Influence score for  (32,0) ->  (37,0)   .0000
Influence score for  (32,0) ->  (38,0)   .0000
Influence score for  (29,0) ->  (38,0)   .0000
Influence score for  (42,0) ->  (39,0)   .0000
Influence score for   (6,0) ->  (39,0)   .3164
Influence score for  (43,0) ->  (40,0)   -.1664
Influence score for  (39,0) ->  (40,0)   .0000
Influence score for  (32,0) ->  (41,0)   .0000
Influence score for  (29,0) ->  (41,0)   .1605
Influence score for  (20,0) ->  (42,0)   .1918
Influence score for  (17,0) ->  (42,0)   .2905
Influence score for  (23,0) ->  (43,0)   -.3252
Influence score for  (13,0) ->  (43,0)   -.3252
Influence score for  (13,0) ->  (44,0)   .2052
Influence score for   (3,0) ->  (44,0)   .3307
Influence score for  (17,0) ->  (45,0)   .0000
Influence score for  (14,0) ->  (45,0)   .0000
Influence score for  (48,0) ->  (46,0)   .0000
Influence score for  (11,0) ->  (46,0)   .0000
Influence score for  (27,0) ->  (47,0)   .6554
Influence score for  (32,0) ->  (48,0)   .4939
Influence score for  (17,0) ->  (48,0)   .2265
Influence score for  (20,0) ->  (49,0)   .3307
Influence score for  (13,0) ->  (49,0)   .3307
Influence score for  (16,0) ->  (50,0)   .0000
Influence score for  (13,0) ->  (50,0)   -.3290

-----------------------------------------------------------------------------
- Post-processing                                  DOT graphics format output
-----------------------------------------------------------------------------

digraph abstract { 

label = "Banjo Version 2.2.0\nHigh scoring network, score: -8230.4893\nProject: 50.2\nUser: lsand039\nDataset: 50-vars-377-temporal-observations"; 
labeljust="l"; 

    0 [label="Alzheimer"];
    1 [label="GNG4"];
    2 [label="THBS1"];
    3 [label="SIX6"];
    4 [label="GRIK1"];
    5 [label="WWC1"];
    6 [label="KIR2DS3"];
    7 [label="CEACAM6"];
    8 [label="NDUFA7"];
    9 [label="TLR8"];
    10 [label="FAIM3"];
    11 [label="MDFIC"];
    12 [label="GH1"];
    13 [label="REG1B"];
    14 [label="NTRK1"];
    15 [label="PDZD3"];
    16 [label="EDN1"];
    17 [label="ERGIC3"];
    18 [label="S100A2"];
    19 [label="HS3ST1"];
    20 [label="OR12D3"];
    21 [label="BCL3"];
    22 [label="PTGER1"];
    23 [label="LBP"];
    24 [label="MAP3K13"];
    25 [label="LAG3"];
    26 [label="CAMP"];
    27 [label="MLLT1"];
    28 [label="DSG3"];
    29 [label="CYP2C18"];
    30 [label="LPHN2"];
    31 [label="TTC12"];
    32 [label="KANK2"];
    33 [label="KIR2DS5"];
    34 [label="PF4"];
    35 [label="MCF2L2"];
    36 [label="OSBPL1A"];
    37 [label="AP3B2"];
    38 [label="ABCA1"];
    39 [label="SGPL1"];
    40 [label="NTNG1"];
    41 [label="NFE2"];
    42 [label="CABP5"];
    43 [label="NOC2L"];
    44 [label="PTK7"];
    45 [label="CFTR"];
    46 [label="NPY6R"];
    47 [label="SHANK1"];
    48 [label="SNTB2"];
    49 [label="ST8SIA2"];
    50 [label="BMPR2"];

    1->0;
    2->0;
    46->0;
    11->1;
    30->1;
    23->2;
    48->2;
    13->3;
    30->3;
    1->4;
    12->4;
    13->5;
    23->5;
    14->6;
    23->6;
    12->7;
    20->7;
    0->8;
    27->8;
    40->9;
    42->9;
    14->10;
    19->10;
    9->11;
    16->11;
    14->12;
    42->12;
    20->13;
    32->13;
    5->14;
    48->14;
    35->15;
    48->15;
    14->16;
    27->16;
    20->17;
    19->18;
    43->18;
    13->19;
    38->19;
    8->21;
    10->21;
    12->22;
    45->22;
    13->23;
    42->23;
    16->24;
    40->24;
    28->25;
    40->25;
    36->26;
    44->26;
    20->27;
    42->27;
    3->28;
    23->28;
    3->29;
    48->29;
    11->30;
    42->30;
    13->31;
    23->31;
    27->32;
    42->32;
    0->33;
    4->33;
    13->33;
    17->34;
    28->34;
    4->35;
    13->35;
    15->36;
    27->36;
    32->37;
    35->37;
    29->38;
    32->38;
    6->39;
    42->39;
    39->40;
    43->40;
    29->41;
    32->41;
    17->42;
    20->42;
    13->43;
    23->43;
    3->44;
    13->44;
    14->45;
    17->45;
    11->46;
    48->46;
    27->47;
    17->48;
    32->48;
    13->49;
    20->49;
    13->50;
    16->50;
}

